Package: hilbertSimilarity 0.4.3.9000

hilbertSimilarity: Hilbert Similarity Index for High Dimensional Data

Quantifying similarity between high-dimensional single cell samples is challenging, and usually requires some simplifying hypothesis to be made. By transforming the high dimensional space into a high dimensional grid, the number of cells in each sub-space of the grid is characteristic of a given sample. Using a Hilbert curve each sample can be visualized as a simple density plot, and the distance between samples can be calculated from the distribution of cells using the Jensen-Shannon distance. Bins that correspond to significant differences between samples can identified using a simple bootstrap procedure.

Authors:Yann Abraham [aut, cre], Marilisa Neri [aut], John Skilling [ctb]

hilbertSimilarity_0.4.3.9000.tar.gz
hilbertSimilarity_0.4.3.9000.zip(r-4.5)hilbertSimilarity_0.4.3.9000.zip(r-4.4)hilbertSimilarity_0.4.3.9000.zip(r-4.3)
hilbertSimilarity_0.4.3.9000.tgz(r-4.4-x86_64)hilbertSimilarity_0.4.3.9000.tgz(r-4.4-arm64)hilbertSimilarity_0.4.3.9000.tgz(r-4.3-x86_64)hilbertSimilarity_0.4.3.9000.tgz(r-4.3-arm64)
hilbertSimilarity_0.4.3.9000.tar.gz(r-4.5-noble)hilbertSimilarity_0.4.3.9000.tar.gz(r-4.4-noble)
hilbertSimilarity_0.4.3.9000.tgz(r-4.4-emscripten)hilbertSimilarity_0.4.3.9000.tgz(r-4.3-emscripten)
hilbertSimilarity.pdf |hilbertSimilarity.html
hilbertSimilarity/json (API)

# Install 'hilbertSimilarity' in R:
install.packages('hilbertSimilarity', repos = c('https://yannabraham.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/yannabraham/hilbertsimilarity/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

4.74 score 5 stars 11 scripts 144 downloads 11 exports 2 dependencies

Last updated 5 years agofrom:a54c0a7eb1. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 03 2024
R-4.5-win-x86_64NOTENov 03 2024
R-4.5-linux-x86_64NOTENov 03 2024
R-4.4-win-x86_64NOTENov 03 2024
R-4.4-mac-x86_64NOTENov 03 2024
R-4.4-mac-aarch64NOTENov 03 2024
R-4.3-win-x86_64NOTENov 03 2024
R-4.3-mac-x86_64NOTENov 03 2024
R-4.3-mac-aarch64NOTENov 03 2024

Exports:add.cutandrewsProjectiondo.cutdo.hilberthilbert.orderhilbertProjectionjs.distlocalMaximalocalMinimamake.cutshow.cut

Dependencies:entropyRcpp

Comparing Samples using hilbertSimilarity

Rendered fromcomparing_samples.Rmdusingknitr::rmarkdownon Nov 03 2024.

Last update: 2019-10-29
Started: 2016-02-23

Identifying Treatment effects using hilbertSimilarity

Rendered fromidentifying_effects.Rmdusingknitr::rmarkdownon Nov 03 2024.

Last update: 2019-10-29
Started: 2016-02-23