Package: hilbertSimilarity
Type: Package
Title: Hilbert Similarity Index for High Dimensional Data
Version: 0.4.4.9000
Date: 2026-01-05
Authors@R: c(person('Yann','Abraham',email='yann.abraham@gmail.com',role=c('aut','cre')),
             person('Marilisa','Neri',email='marilisa.neri@gmail.com',role='aut'),
             person('John','Skilling',role='ctb'))
Description: Quantifying similarity between high-dimensional single
        cell samples is challenging, and usually requires some
        simplifying hypothesis to be made. By transforming the high
        dimensional space into a high dimensional grid, the number of
        cells in each sub-space of the grid is characteristic of a
        given sample. Using a Hilbert curve each sample can be
        visualized as a simple density plot, and the distance between
        samples can be calculated from the distribution of cells using
        the Jensen-Shannon distance. Bins that correspond to
        significant differences between samples can identified using a
        simple bootstrap procedure.
LinkingTo: Rcpp
Imports: Rcpp, entropy
Suggests: knitr, rmarkdown, ggplot2, dplyr, tidyr, reshape2,
        bodenmiller, abind
License: GPL (>= 3)
Encoding: UTF-8
URL: https://github.com/yannabraham/hilbertSimilarity
BugReports: https://github.com/yannabraham/hilbertSimilarity/issues
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Repository: https://yannabraham.r-universe.dev
Date/Publication: 2026-01-14 13:30:22 UTC
RemoteUrl: https://github.com/yannabraham/hilbertsimilarity
RemoteRef: HEAD
RemoteSha: 295dff6dc0c3177fa293262f0439b3c9e1a3d5a0
NeedsCompilation: yes
Packaged: 2026-06-13 08:15:09 UTC; root
Author: Yann Abraham [aut, cre],
  Marilisa Neri [aut],
  John Skilling [ctb]
Maintainer: Yann Abraham <yann.abraham@gmail.com>